Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs58351812 chr3:100347443 G/A 1.43E-5 292 21.97 19.3 12.05 KM Plot
CESC rs58357759 chr3:149468935 T/C 7.57E-5 293 21.73 16.87 11.6 KM Plot
CESC rs58360828 chr19:11391302 AACCTG/A 5.23E-5 293 20.23 21.27 21.2 KM Plot
CESC rs58380331 chr10:7666642 A/G 1.63E-5 287 23.3 19.95 15.33 KM Plot
CESC rs58459843 chr3:129162501 G/A 4.75E-5 295 21.47 20.95 14.73 KM Plot
CESC rs58464490 chr11:33069186 G/A 5.99E-7 292 22.83 20.13 1.7 KM Plot
CESC rs58643876 chr9:115627285 C/A 1.49E-5 293 8.43 20.67 23.12 KM Plot
CESC rs59075919 chr10:7665493 G/A 1.74E-5 286 23.12 19.95 15.33 KM Plot
CESC rs59587833 chr16:17448000 G/A 0 286 21.2 28.05 2.63 KM Plot
CESC rs59590779 chr1:59087779 T/C 8.15E-8 294 21.23 25.63 11.13 KM Plot
CESC rs59732406 chr11:33098308 C/T 0 297 22.4 20.6 0.5 KM Plot
CESC rs59858012 chr17:29078582 C/T 0 289 21.23 21.08 2.47 KM Plot
CESC rs59870670 chr8:33651093 AT/ATTT 1.54E-5 293 21.73 19.53 11.98 KM Plot
CESC rs59991709 chr11:33065143 T/C 5.06E-7 294 23.3 20.13 1.7 KM Plot
CESC rs60112577 chr17:35833209 G/A 8.59E-5 291 21.3 25.9 8.43 KM Plot